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001 Biology for differential gene expression analysis - introduction.mp4
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11.7 MB
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001 Biology for differential gene expression analysis - introduction_en.vtt
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1 KB
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001 Capstone project.mp4
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4.7 MB
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001 Capstone project_en.vtt
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001 First things first - RStudio installation.mp4
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19.3 MB
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001 First things first - RStudio installation_en.vtt
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3.6 KB
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001 Intro to RNAseq.mp4
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44.3 MB
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001 Intro to RNAseq_en.vtt
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8.8 KB
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001 Lab techniques for differential gene expression analysis - intro.mp4
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6.3 MB
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001 Lab techniques for differential gene expression analysis - intro_en.vtt
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512 B
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001 Pathway analysis - ORA + GSEA approaches.mp4
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232.6 MB
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001 Pathway analysis - ORA + GSEA approaches_en.vtt
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18.4 KB
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001 Visualization of gene expression data.mp4
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182.8 MB
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001 Visualization of gene expression data_en.vtt
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19.3 KB
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001 Welcome to the course_.mp4
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71.1 MB
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001 Welcome to the course__en.vtt
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3.3 KB
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002 Analytical advantages of RNAseq and overview of RNAseq analysis pipeline.mp4
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41.8 MB
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002 Analytical advantages of RNAseq and overview of RNAseq analysis pipeline_en.vtt
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10.7 KB
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002 Capstone project materials.html
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3.1 KB
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002 Course structure, aims and objectives.mp4
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40.9 MB
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002 Course structure, aims and objectives_en.vtt
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3.3 KB
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002 Differential gene expression - fundamentals.mp4
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57.2 MB
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002 Differential gene expression - fundamentals_en.vtt
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5.9 KB
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002 Hands on ORA-based pathway analysis.html
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1.2 KB
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002 Sequencing.mp4
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11.4 MB
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002 Sequencing_en.vtt
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1.1 KB
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002 Using Venny for venn diagram analysis.html
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1.1 KB
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002 What is this thing called bioinformatics_.mp4
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31.6 MB
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002 What is this thing called bioinformatics__en.vtt
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11.1 KB
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003 Hands on GSEA-based pathway analysis.html
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614.4 B
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003 Learn to visualize gene expression data in R.html
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6.7 KB
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003 Overview of gene expression.mp4
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116.5 MB
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003 Overview of gene expression_en.vtt
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9.2 KB
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003 PCR.mp4
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27.7 MB
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003 PCR_en.vtt
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2.4 KB
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003 RNAseq analysis pipeline.mp4
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20.5 MB
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003 RNAseq analysis pipeline_en.vtt
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6.6 KB
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003 Sample preparation for differential gene expression analysis.mp4
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25.9 MB
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003 Sample preparation for differential gene expression analysis_en.vtt
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6.2 KB
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003 Your first bioinformatic challenge_.mp4
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4 MB
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003 Your first bioinformatic challenge__en.vtt
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004 FastQC_ assessing the quality of sequencing library.mp4
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36.9 MB
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004 FastQC_ assessing the quality of sequencing library_en.vtt
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9.4 KB
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004 Measuring gene expression with qPCR.mp4
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94.3 MB
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004 Measuring gene expression with qPCR_en.vtt
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6.4 KB
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004 Quiz 1 file - an explanation.mp4
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20.7 MB
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004 Quiz 1 file - an explanation_en.vtt
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921.6 B
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004 Sanger sequencing.mp4
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11.3 MB
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004 Sanger sequencing_en.vtt
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004 Translation of genetic code - theory.mp4
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15.6 MB
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004 Translation of genetic code - theory_en.vtt
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5.9 KB
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004 Using pathway analysis in hypothesis-free studies.mp4
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17.9 MB
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004 Using pathway analysis in hypothesis-free studies_en.vtt
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4 KB
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004 Visualization of gene expression data hands on exercise.html
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1 KB
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005 Next generation sequencing.mp4
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12.5 MB
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005 Next generation sequencing_en.vtt
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005 Quiz 1 walkthrough - undertaking a BLAST search.mp4
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49.9 MB
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005 Quiz 1 walkthrough - undertaking a BLAST search_en.vtt
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005 Translation of genetic code - practice.mp4
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17.6 MB
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005 Translation of genetic code - practice_en.vtt
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5.7 KB
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005 Your FastQC exercise.html
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005 qPCR quantification of gene expression.mp4
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145.4 MB
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005 qPCR quantification of gene expression_en.vtt
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15.9 KB
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006 FastQC exercise walkthrough.mp4
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8.7 MB
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006 FastQC exercise walkthrough_en.vtt
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1.9 KB
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006 Microarrays.mp4
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39.8 MB
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006 Microarrays_en.vtt
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006 Open Reading Frame translation walk-through.mp4
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7 MB
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006 Open Reading Frame translation walk-through_en.vtt
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006 qPCR quiz - part 1 - intro.mp4
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4.9 MB
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006 qPCR quiz - part 1 - intro_en.vtt
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007 Alignment (TUXEDO).mp4
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29.8 MB
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007 Alignment (TUXEDO)_en.vtt
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9.9 KB
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007 Gene structure and splicing.mp4
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19.2 MB
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007 Gene structure and splicing_en.vtt
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007 Lab techniques for differential gene expression analysis - section summary.mp4
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4.6 MB
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007 Lab techniques for differential gene expression analysis - section summary_en.vtt
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007 qPCR quiz walkthrough - part 1.mp4
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14.3 MB
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007 qPCR quiz walkthrough - part 1_en.vtt
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008 Alignment (Rsubread).mp4
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116.3 MB
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008 Alignment (Rsubread)_en.vtt
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008 Biology for differential gene expression analysis - section summary.mp4
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008 Biology for differential gene expression analysis - section summary_en.vtt
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008 Experimental considerations for differential gene expression.mp4
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008 Experimental considerations for differential gene expression_en.vtt
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009 Rsubread alignment_ stringent vs. less stringent alignment criteria.html
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009 Statistical considerations for differential gene expression.mp4
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009 Statistical considerations for differential gene expression_en.vtt
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010 Spreadsheet qPCR analysis_ preserving variability of expression.mp4
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010 Spreadsheet qPCR analysis_ preserving variability of expression_en.vtt
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010 Strict and less strict alignment walkthrough.mp4
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010 Strict and less strict alignment walkthrough_en.vtt
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011 Data analysis in RStudio.mp4
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54.2 MB
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011 Data analysis in RStudio_en.vtt
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011 Strict and less strict alignment quiz walkthrough.mp4
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26.8 MB
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011 Strict and less strict alignment quiz walkthrough_en.vtt
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012 Getting ready for your next quiz_ dat package deprecation and functions.html
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012 Transcriptome assembly (TUXEDO).mp4
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48.5 MB
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012 Transcriptome assembly (TUXEDO)_en.vtt
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013 Installing Cuff-apps from TUXEDO toolkit.mp4
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38.6 MB
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013 Installing Cuff-apps from TUXEDO toolkit_en.vtt
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013 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q1.html
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014 Comparing genome annotations with Cuffcompare.html
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014 Part 2 - Q1 Walkthrough.mp4
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65.6 MB
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014 Part 2 - Q1 Walkthrough_en.vtt
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015 Cuffcompare quiz walkthrough.mp4
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93.7 MB
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015 Cuffcompare quiz walkthrough_en.vtt
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015 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q2.html
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016 Part 2 - Q2 walkthrough.mp4
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016 Part 2 - Q2 walkthrough_en.vtt
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016 Read counts and FPKM_RPKM.mp4
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20.2 MB
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016 Read counts and FPKM_RPKM_en.vtt
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017 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q3.html
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017 Read counting (TUXEDO).mp4
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017 Read counting (TUXEDO)_en.vtt
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018 Part 2 - Q3 walkthrough.mp4
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32.4 MB
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018 Part 2 - Q3 walkthrough_en.vtt
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018 Read counts (Rsubread).html
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019 Is the expression of this tumour suppressor affected by this drug_ - Part 2 - Q4.html
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019 RPKM normalization (R).mp4
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15.8 MB
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019 RPKM normalization (R)_en.vtt
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020 Convert read counts to RPKMs.html
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020 Part 2 - Q4 walkthrough.mp4
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020 Part 2 - Q4 walkthrough_en.vtt
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021 Quiz 18 - Code to get the answers walkthrough.html
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022 Differential gene expression (TUXEDO).mp4
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022 Differential gene expression (TUXEDO)_en.vtt
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023 General Linear Models (GLMs) for differential gene expression analysis - part 1.mp4
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182.9 MB
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023 General Linear Models (GLMs) for differential gene expression analysis - part 1_en.vtt
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024 GLMs for differential gene expression analysis - part 2.mp4
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024 GLMs for differential gene expression analysis - part 2_en.vtt
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025 GLMs for differential gene expression analysis - part 3.mp4
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025 GLMs for differential gene expression analysis - part 3_en.vtt
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026 GLMs for differential gene expression analysis - part 4.mp4
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026 GLMs for differential gene expression analysis - part 4_en.vtt
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027 Design matrices for GLMs.mp4
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027 Design matrices for GLMs_en.vtt
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028 Further read count processing for differential expression analysis.mp4
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15.2 MB
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028 Further read count processing for differential expression analysis_en.vtt
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029 Differential expression (R's GLM)_ limma, edgeR.mp4
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24.5 MB
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029 Differential expression (R's GLM)_ limma, edgeR_en.vtt
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030 Differential expression_ impact of filtering & normalization.html
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031 Differential expression quiz walkthrough.mp4
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21.1 MB
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031 Differential expression quiz walkthrough_en.vtt
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032 Differential expression_ RankProd.mp4
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187.6 MB
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032 Differential expression_ RankProd_en.vtt
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16 KB
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033 Differential expression with RankProd in R.html
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034 RankProd Quiz walkthrough.mp4
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32.5 MB
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034 RankProd Quiz walkthrough_en.vtt
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22397215-seq.fasta.txt
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23053306-I.csv
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23122006-II.csv
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23122890-III.csv
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23129856-IV.csv
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23132060-I.R.txt
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23132068-II.R.txt
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23132080-III.R.txt
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23132090-IV.R.txt
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23327894-sequencing-sample.fastq.txt
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23404398-alignment.R.txt
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23412554-hg19-chr1.fa.txt
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23414530-1.fastq.txt
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23715426-gene-lengths.csv
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23715442-raw-counts.csv
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24461546-gene-lengths.csv
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24461550-raw-counts.csv
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26430078-ORA.txt
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26459340-Venny-exercise.csv
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26792492-d.csv
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26809904-capstone.csv
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28879892-RankProd-analysis-class.csv
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30949486-data.Rdata
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Bonus Resources.txt
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GSEA.rnk
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Get Bonus Downloads Here.url
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_GSEA.rnk
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external-assets-links.txt
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pred.gtf
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ref.gtf
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