|
|
1. Brief introduction to DNA, RNA, and Protein.mp4
|
MP4
|
26.7 MB
|
|
|
1. Brief introduction to DNA, RNA, and Protein.srt
|
SRT
|
6.3 KB
|
|
|
1. Concatenate Multiple Sequences into a Single Sequence.mp4
|
MP4
|
34.3 MB
|
|
|
1. Concatenate Multiple Sequences into a Single Sequence.srt
|
SRT
|
4 KB
|
|
|
1. Extract Regions from a Sequence.mp4
|
MP4
|
60.3 MB
|
|
|
1. Extract Regions from a Sequence.srt
|
SRT
|
6.7 KB
|
|
|
1. FASTQ.mp4
|
MP4
|
41.3 MB
|
|
|
1. FASTQ.srt
|
SRT
|
7.8 KB
|
|
|
1. Illumina and Ion Torrent Sequencing Platforms.mp4
|
MP4
|
22.6 MB
|
|
|
1. Illumina and Ion Torrent Sequencing Platforms.srt
|
SRT
|
5.5 KB
|
|
|
1. Read and Write Sequence Files..mp4
|
MP4
|
41.8 MB
|
|
|
1. Read and Write Sequence Files..srt
|
SRT
|
4.5 KB
|
|
|
1. Remove Poly-A Tails from Sequences.mp4
|
MP4
|
24.1 MB
|
|
|
1. Remove Poly-A Tails from Sequences.srt
|
SRT
|
3.7 KB
|
|
|
1. Split Sequence(s) into Smaller Sequences.mp4
|
MP4
|
50.3 MB
|
|
|
1. Split Sequence(s) into Smaller Sequences.srt
|
SRT
|
4.5 KB
|
|
|
1. The Sanger Sequencing Method.mp4
|
MP4
|
9.8 MB
|
|
|
1. The Sanger Sequencing Method.srt
|
SRT
|
2.9 KB
|
|
|
1.1 ES - Complete Genome Sequence of Bdellovibrio sp. Strain KM01, a Predatory Bacterium Isolated from Soil.pdf
|
PDF
|
130.8 KB
|
|
|
1.1 High-Throughput Sequencing Technologies.pdf
|
PDF
|
1.3 MB
|
|
|
1.1 Human Genome Project_ Sequencing the Human Genome _ Learn Science at Scitable.pdf
|
PDF
|
1.1 MB
|
|
|
1.svg
|
SVG
|
64.8 KB
|
|
|
10. Extract Regions from a Sequence Alignment.mp4
|
MP4
|
64.3 MB
|
|
|
10. Extract Regions from a Sequence Alignment.srt
|
SRT
|
3.8 KB
|
|
|
10.1 EA - Phylogenetic relationships of Atractylodes lancea, A. chinensis and A. macrocephala, revealed by complete plastome and nuclear gene sequences.pdf
|
PDF
|
3.3 MB
|
|
|
11. Extract Features from GFFGTF.mp4
|
MP4
|
73.6 MB
|
|
|
11. Extract Features from GFFGTF.srt
|
SRT
|
5.8 KB
|
|
|
12. Extracts Sequences from FASTA using BEDGFFVCF file..mp4
|
MP4
|
52.9 MB
|
|
|
12. Extracts Sequences from FASTA using BEDGFFVCF file..srt
|
SRT
|
4.6 KB
|
|
|
12.1 BGF - Pan-cancer analysis of transcripts encoding novel open-reading frames (nORFs) and their potential biological functions.pdf
|
PDF
|
3.6 MB
|
|
|
13. Extract Flanking Intervals using BEDGFFVCF file..mp4
|
MP4
|
77.8 MB
|
|
|
13. Extract Flanking Intervals using BEDGFFVCF file..srt
|
SRT
|
6.6 KB
|
|
|
13.1 BF - Genome-Wide Mapping of UV-Induced DNA Damage with CPD-Seq.pdf
|
PDF
|
500.5 KB
|
|
|
14. Extract Complementing Intervals using BEDGFFVCF file..mp4
|
MP4
|
104.6 MB
|
|
|
14. Extract Complementing Intervals using BEDGFFVCF file..srt
|
SRT
|
6.9 KB
|
|
|
14.1 BC - The epigenomic landscape of transposable elements across normal human development and anatomy.pdf
|
PDF
|
1.8 MB
|
|
|
15. Quality Assessment and Mapping of FASTQ files.mp4
|
MP4
|
70 MB
|
|
|
15. Quality Assessment and Mapping of FASTQ files.srt
|
SRT
|
4.1 KB
|
|
|
15.1 FX - Gene Duplication in the Sugarcane Genome A Case Study of Allele Interactions and Evolutionary Patterns in Two Genic Regions.pdf
|
PDF
|
5.1 MB
|
|
|
16. Filtering, Sorting and Summarizing of BAM file Extract Mapped Reads in FASTA.mp4
|
MP4
|
65.7 MB
|
|
|
16. Filtering, Sorting and Summarizing of BAM file Extract Mapped Reads in FASTA.srt
|
SRT
|
5.3 KB
|
|
|
17. Variant Calling and filtration.mp4
|
MP4
|
73.9 MB
|
|
|
17. Variant Calling and filtration.srt
|
SRT
|
4.7 KB
|
|
|
17.1 BCC - Whole-genome sequence analysis reveals unique SNP profiles to distinguish vaccine and wild-type strains of bovine herpesvirus-1 (BoHV-1).pdf
|
PDF
|
1.4 MB
|
|
|
18. Normalization of Called Variant and Extract Consensus Sequence.mp4
|
MP4
|
91 MB
|
|
|
18. Normalization of Called Variant and Extract Consensus Sequence.srt
|
SRT
|
7.5 KB
|
|
|
19. Extract Fields from VCF or BCF Files.mp4
|
MP4
|
61.1 MB
|
|
|
19. Extract Fields from VCF or BCF Files.srt
|
SRT
|
3.6 KB
|
|
|
19.1 BCQ - A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens.pdf
|
PDF
|
1.4 MB
|
|
|
2. Extract Subsequence from FASTA with Advanced Options.mp4
|
MP4
|
51.2 MB
|
|
|
2. Extract Subsequence from FASTA with Advanced Options.srt
|
SRT
|
4.3 KB
|
|
|
2. FASTA and GenBank.mp4
|
MP4
|
35.6 MB
|
|
|
2. FASTA and GenBank.srt
|
SRT
|
7.2 KB
|
|
|
2. Introduction to the course.html
|
HTML
|
204.8 B
|
|
|
2. Merge Two FASTAFASTQ Files..mp4
|
MP4
|
135.5 MB
|
|
|
2. Merge Two FASTAFASTQ Files..srt
|
SRT
|
5.1 KB
|
|
|
2. Pacific Biosciences and Nanopore sequencing platforms.mp4
|
MP4
|
21.3 MB
|
|
|
2. Pacific Biosciences and Nanopore sequencing platforms.srt
|
SRT
|
4.6 KB
|
|
|
2. Read and Write Pairs from Alignments.mp4
|
MP4
|
40.6 MB
|
|
|
2. Read and Write Pairs from Alignments.srt
|
SRT
|
3.5 KB
|
|
|
2. Remove Redundant Sequences.mp4
|
MP4
|
70.9 MB
|
|
|
2. Remove Redundant Sequences.srt
|
SRT
|
5.4 KB
|
|
|
2. Split FASTA into Smaller Sequences or Codons.mp4
|
MP4
|
63.4 MB
|
|
|
2. Split FASTA into Smaller Sequences or Codons.srt
|
SRT
|
4.5 KB
|
|
|
2. Technical Troubles and Causes.mp4
|
MP4
|
25.7 MB
|
|
|
2. Technical Troubles and Causes.srt
|
SRT
|
5.9 KB
|
|
|
2.1 MAN0014435_Trbleshoot_Sanger_seq_data_UB.pdf
|
PDF
|
1.9 MB
|
|
|
2.1 RED - Comparative Genomics-Based Identification and Analysis of Cis-Regulatory Elements.pdf
|
PDF
|
889.4 KB
|
|
|
2.svg
|
SVG
|
67.4 KB
|
|
|
3. Combine Overlapping Features.mp4
|
MP4
|
37.9 MB
|
|
|
3. Combine Overlapping Features.srt
|
SRT
|
3.2 KB
|
|
|
3. Convert FASTA to Tabular and Vice Versa.mp4
|
MP4
|
112.6 MB
|
|
|
3. Convert FASTA to Tabular and Vice Versa.srt
|
SRT
|
4.8 KB
|
|
|
3. Extract Sequence Window from FASTA.mp4
|
MP4
|
45.7 MB
|
|
|
3. Extract Sequence Window from FASTA.srt
|
SRT
|
4.7 KB
|
|
|
3. GFFGTF and BED.mp4
|
MP4
|
54.3 MB
|
|
|
3. GFFGTF and BED.srt
|
SRT
|
5.6 KB
|
|
|
3. Remove Vectors Parts from Sequence(s).mp4
|
MP4
|
30.4 MB
|
|
|
3. Remove Vectors Parts from Sequence(s).srt
|
SRT
|
4.6 KB
|
|
|
3. Split FASTA into Smaller Sequences or Parts.mp4
|
MP4
|
30 MB
|
|
|
3. Split FASTA into Smaller Sequences or Parts.srt
|
SRT
|
2.4 KB
|
|
|
3. Use of High-Throughput Sequencing in Genomics and Epigenomics.mp4
|
MP4
|
19.3 MB
|
|
|
3. Use of High-Throughput Sequencing in Genomics and Epigenomics.srt
|
SRT
|
4.8 KB
|
|
|
3. Visualize Trace Files using Teal.mp4
|
MP4
|
58.2 MB
|
|
|
3. Visualize Trace Files using Teal.srt
|
SRT
|
4.7 KB
|
|
|
3.1 Chromatin accessibility and the regulatory epigenome.pdf
|
PDF
|
1.6 MB
|
|
|
3.1 Tracy.pdf
|
PDF
|
1.6 MB
|
|
|
3.1 WED - An Appraisal of Human Mitochondrial DNA Instability New Insights into the Role of Non-Canonical DNA Structures and Sequence Motifs.pdf
|
PDF
|
2.1 MB
|
|
|
3.2 Towards a comprehensive catalogue of validated and target-linked human enhancers.pdf
|
PDF
|
3.2 MB
|
|
|
3.svg
|
SVG
|
67.6 KB
|
|
|
3MBP.fasta
|
FASTA
|
3.8 MB
|
|
|
4. Convert BAM to BED.mp4
|
MP4
|
66.1 MB
|
|
|
4. Convert BAM to BED.srt
|
SRT
|
3.6 KB
|
|
|
4. Extract Chromosome(s) from Genome.mp4
|
MP4
|
63.6 MB
|
|
|
4. Extract Chromosome(s) from Genome.srt
|
SRT
|
5.1 KB
|
|
|
4. Merge Multiple Sorted Alignment Files.mp4
|
MP4
|
64.1 MB
|
|
|
4. Merge Multiple Sorted Alignment Files.srt
|
SRT
|
3.7 KB
|
|
|
4. Remove Adapters from FASTAFASTQ.mp4
|
MP4
|
82.2 MB
|
|
|
4. Remove Adapters from FASTAFASTQ.srt
|
SRT
|
4.8 KB
|
|
|
4. SAMBAM.mp4
|
MP4
|
38.7 MB
|
|
|
4. SAMBAM.srt
|
SRT
|
5.2 KB
|
|
|
4. Split Sequence Based on N Letter(s).mp4
|
MP4
|
37.6 MB
|
|
|
4. Split Sequence Based on N Letter(s).srt
|
SRT
|
3 KB
|
|
|
4. Use of High-Throughput Sequencing in Transcriptomics, Metagenomics, and Cancer.mp4
|
MP4
|
28 MB
|
|
|
4. Use of High-Throughput Sequencing in Transcriptomics, Metagenomics, and Cancer.srt
|
SRT
|
5.7 KB
|
|
|
4. Visualize Trace Files using Teal (2).mp4
|
MP4
|
52.5 MB
|
|
|
4. Visualize Trace Files using Teal (2).srt
|
SRT
|
3.8 KB
|
|
|
4.1 EF - CVTree update a newly designed phylogenetic study platform using composition vectors and whole genomes.pdf
|
PDF
|
165.7 KB
|
|
|
4.1 Research Techniques Made Simple Bacterial 16S Ribosomal RNA Gene Sequencing in Cutaneous Research.pdf
|
PDF
|
1.1 MB
|
|
|
4.2 RNA sequencing the teenage years.pdf
|
PDF
|
3.7 MB
|
|
|
4.3 Role of non-coding RNA networks in leukemia progression, metastasis and drug resistance.pdf
|
PDF
|
2.3 MB
|
|
|
4.4 Toward Clinical Implementation of Next-Generation Sequencing-Based Genetic Testing in Rare Diseases Where Are We.pdf
|
PDF
|
2.4 MB
|
|
|
4.svg
|
SVG
|
68 KB
|
|
|
4Tracks.png
|
PNG
|
1.1 MB
|
|
|
5. Convert BAM to FASTQ.mp4
|
MP4
|
35.6 MB
|
|
|
5. Convert BAM to FASTQ.srt
|
SRT
|
2.7 KB
|
|
|
5. Edit Trace Files using MEGA.mp4
|
MP4
|
95.9 MB
|
|
|
5. Edit Trace Files using MEGA.srt
|
SRT
|
5.5 KB
|
|
|
5. Exploring High-Throughput Sequencing Methods.mp4
|
MP4
|
10 MB
|
|
|
5. Exploring High-Throughput Sequencing Methods.srt
|
SRT
|
1.9 KB
|
|
|
5. Extract Gene, mRNA, and CDS from Genome.mp4
|
MP4
|
105.5 MB
|
|
|
5. Extract Gene, mRNA, and CDS from Genome.srt
|
SRT
|
6.6 KB
|
|
|
5. Merge Multiple VCFBCF Files.mp4
|
MP4
|
87 MB
|
|
|
5. Merge Multiple VCFBCF Files.srt
|
SRT
|
4.7 KB
|
|
|
5. Remove Low-Quality Bases from FASTAFASTQ.mp4
|
MP4
|
98.3 MB
|
|
|
5. Remove Low-Quality Bases from FASTAFASTQ.srt
|
SRT
|
8.5 KB
|
|
|
5. VCFBCF.mp4
|
MP4
|
49.1 MB
|
|
|
5. VCFBCF.srt
|
SRT
|
6 KB
|
|
|
5.1 MEGA11.pdf
|
PDF
|
518.6 KB
|
|
|
5reads example.fastq
|
FASTQ
|
614.4 B
|
|
|
5reads example2.fastq
|
FASTQ
|
614.4 B
|
|
|
6. Edit Trace Files using Finch TV.mp4
|
MP4
|
94.9 MB
|
|
|
6. Edit Trace Files using Finch TV.srt
|
SRT
|
3.9 KB
|
|
|
6. Extract Genomic Features with Advanced Options.mp4
|
MP4
|
81.6 MB
|
|
|
6. Extract Genomic Features with Advanced Options.srt
|
SRT
|
3.3 KB
|
|
|
6. Subtract Overlapping Intervals from BEDGFFVCF.mp4
|
MP4
|
47.6 MB
|
|
|
6. Subtract Overlapping Intervals from BEDGFFVCF.srt
|
SRT
|
4.9 KB
|
|
|
60Ns.fasta
|
FASTA
|
819.2 B
|
|
|
6reads example.fastq
|
FASTQ
|
819.2 B
|
|
|
6reads example2.fastq
|
FASTQ
|
819.2 B
|
|
|
7. Extract Genomic Features, Translations, and Summary Table.mp4
|
MP4
|
72.8 MB
|
|
|
7. Extract Genomic Features, Translations, and Summary Table.srt
|
SRT
|
4.7 KB
|
|
|
7. Sanger sequencing and trace editor software.html
|
HTML
|
204.8 B
|
|
|
7.1 CR - ORFer – retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files.pdf
|
PDF
|
1.1 MB
|
|
|
8. Align Sequences using BLAST.mp4
|
MP4
|
64 MB
|
|
|
8. Align Sequences using BLAST.srt
|
SRT
|
5.3 KB
|
|
|
8.1 Sub - Rapid and Detailed Characterization of Transgene Insertion Sites in Genetically Modified Plants via Nanopore Sequencing.pdf
|
PDF
|
1.5 MB
|
|
|
9. Extract Sequences using IDs or BED.mp4
|
MP4
|
39.5 MB
|
|
|
9. Extract Sequences using IDs or BED.srt
|
SRT
|
2.4 KB
|
|
|
Bonus Resources.txt
|
TXT
|
307.2 B
|
|
|
CP058348.gb
|
GB
|
8.7 MB
|
|
|
GCF_000146045.2_R64_genomic.gbff
|
GBFF
|
31.3 MB
|
|
|
GCF_000146045.2_R64_genomic_chI,II,III.gbff
|
GBFF
|
3.5 MB
|
|
|
GCF_000146045.2_R64_genomic_chI.gbff
|
GBFF
|
569.8 KB
|
|
|
GFF.gff3
|
GFF3
|
1.7 KB
|
|
|
Galaxy5-[Filter_Tabular_on_data_3].bed
|
BED
|
0 B
|
|
|
Genome-Extract_features.fasta
|
FASTA
|
44.7 KB
|
|
|
Get Bonus Downloads Here.url
|
URL
|
204.8 B
|
|
|
HBB.ffn
|
FFN
|
72.6 KB
|
|
|
HBB.gb
|
GB
|
155.3 KB
|
|
|
HBBRefSeq.gb
|
GB
|
173.8 KB
|
|
|
HBB_refseq_protein.fasta
|
FASTA
|
2.3 KB
|
|
|
HBB_refseq_transcript.fasta
|
FASTA
|
8.2 KB
|
|
|
IDs-seqtksubseq.txt
|
TXT
|
102.4 B
|
|
|
NM_000518.5.fasta
|
FASTA
|
716.8 B
|
|
|
REF.fasta
|
FASTA
|
10 KB
|
|
|
Remove Adaptors.fasta
|
FASTA
|
307.2 B
|
|
|
SNP_K-seqtk_listhet.fasta
|
FASTA
|
512 B
|
|
|
SNPs-seqtk_listhet.fasta
|
FASTA
|
512 B
|
|
|
Saccharomyces_cerevisiae.R64-1-1.51.chromosome.I.gff3
|
GFF3
|
97 KB
|
|
|
Saccharomyces_cerevisiae.R64-1-1.51.gff3
|
GFF3
|
5.4 MB
|
|
|
Saccharomyces_cerevisiae.R64-1-1.dna.chromosome.I.fa
|
FA
|
228.6 KB
|
|
|
Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa
|
FA
|
11.8 MB
|
|
|
Sample.fas
|
FAS
|
1.4 KB
|
|
|
Seqtk_subseq_bed.bed
|
BED
|
0 B
|
|
|
Seqtk_subseq_ids_list.txt
|
TXT
|
0 B
|
|
|
Seqtk_subseq_known_seq.fasta
|
FASTA
|
204.8 B
|
|
|
Seqtk_subseq_sequencing_file.fasta
|
FASTA
|
10 KB
|
|
|
WED.txt
|
TXT
|
1.4 KB
|
|
|
WED1.txt
|
TXT
|
1.1 KB
|
|
|
XM_002822127.4.fasta
|
FASTA
|
716.8 B
|
|
|
ad-bias.2.vcf
|
VCF
|
2.6 KB
|
|
|
ad-bias.vcf
|
VCF
|
2.5 KB
|
|
|
adaptors.txt
|
TXT
|
204.8 B
|
|
|
bedtools SubtractBed A file.bed
|
BED
|
0 B
|
|
|
bedtools SubtractBed B file.bed
|
BED
|
0 B
|
|
|
bedtools complement - chromosomeSize.txt
|
TXT
|
102.4 B
|
|
|
bedtools flank - chromosomeSize.txt
|
TXT
|
0 B
|
|
|
clustalo-I20210616-123644-0394-75862866-p2m.clustal_num
|
CLUSTAL_NUM
|
12.6 KB
|
|
|
cutadapt_FASTQ.fastq
|
FASTQ
|
1.9 KB
|
|
|
cutadapt_f_adaptor.fasta
|
FASTA
|
0 B
|
|
|
cutadapt_f_and_r_adaptor.fasta
|
FASTA
|
102.4 B
|
|
|
cutadapt_output.fasta
|
FASTA
|
716.8 B
|
|
|
cutadapt_r_adaptor.fasta
|
FASTA
|
0 B
|
|
|
exons.fasta
|
FASTA
|
614.4 B
|
|
|
extractfeatoutseq.fasta
|
FASTA
|
26.6 KB
|
|
|
fastq-illumina.fastq
|
FASTQ
|
716.8 B
|
|
|
fastq-sanger.fastq
|
FASTQ
|
716.8 B
|
|
|
fastq-solexa.fastq
|
FASTQ
|
716.8 B
|
|
|
index.png
|
PNG
|
342.3 KB
|
|
|
index.svg
|
SVG
|
90.3 KB
|
|
|
index2.png
|
PNG
|
126.5 KB
|
|
|
index2.svg
|
SVG
|
82.8 KB
|
|
|
manual-BED-seqtksubseq.bed
|
BED
|
102.4 B
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merge.bed
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BED
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102.4 B
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outfeat.txt
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TXT
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38.8 KB
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outseq.fasta
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FASTA
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307.2 B
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sample.abi
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ABI
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322.8 KB
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sample.fastq
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FASTQ
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2.9 KB
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sample.scf
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SCF
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140.6 KB
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samtools view - read1.fastq
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FASTQ
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1.2 KB
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samtools view - read2.fastq
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FASTQ
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1.2 KB
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samtools view - regions.bed
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BED
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0 B
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samtools view-read1.fastq
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FASTQ
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1.2 KB
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samtools view-read2.fastq
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FASTQ
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1.2 KB
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samtools view-reference.fasta
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FASTA
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1 KB
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seqdump.fasta
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FASTA
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61.5 KB
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seqtksubseq-FASTA.fasta
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FASTA
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99.4 KB
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seqtksubseq.docx
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DOCX
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56.8 KB
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sequence.fasta
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FASTA
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3.8 MB
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skipredundant.fasta
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FASTA
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1.3 KB
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toy.sam
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SAM
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819.2 B
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trimest.fasta
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FASTA
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1.1 KB
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view.001.sam
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SAM
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5 KB
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