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Udemy - Synthetic Biology Mastery - 100 Labs with Nextflow

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1 - Introduction to Synthetic Biology Mastery

1. Introduction.mp4

MP4

95.4 MB

10 - Module 9 Cloud Scaling and Production Infrastructure

100. Lab 90 Establishing Disaster Recovery and Backup Protocols.html

HTML

19 KB

11 - Module 10 Sovereign Deployment and Capstone Execution

101. Sovereign Deployment and Capstone Execution.mp4

MP4

88.1 MB

102. Lab 91 Architecting Air-Gapped Environments for Secure Research.html

HTML

20.1 KB

103. Lab 92 Deploying Local Container Registries for Isolated Networks.html

HTML

20.3 KB

104. Lab 93 Configuring Federated Learning Nodes for Multi-Site Data.html

HTML

19.7 KB

105. Lab 94 Establishing Secure API Gateways for External Partners.html

HTML

19.6 KB

106. Lab 95 Automating End-to-End Integration Testing Suites.html

HTML

18.1 KB

107. Lab 96 Simulating Production Failure Scenarios and Recovery.html

HTML

18.9 KB

108. Lab 97 Performing Final Security Audits on Deployment Configs.html

HTML

19.6 KB

109. Lab 98 Packaging the Complete Synthetic Biology Architecture.html

HTML

19.6 KB

110. Lab 99 Running Dry-Run Validations of the Capstone System.html

HTML

19.6 KB

111. Lab 100 Capstone Project End-to-End Sovereign Bioproduction Pipeline.html

HTML

20.6 KB

12 - Conclusion

112. Conclusion.mp4

MP4

88.1 MB

2 - Module 1 Foundations and Local Environment Setup

10. Lab 8 Managing Environment Variables for Local Configs.html

HTML

17.9 KB

11. Lab 9 Automating Local Testing with Pytest Framework.html

HTML

17.9 KB

12. Lab 10 Initial Success Milestone Local Pipeline Execution.html

HTML

18.2 KB

2. Foundations and Local Environment Setup.mp4

MP4

68.2 MB

3 - Module 2 Sequence Analysis and Computational Tooling

13. Sequence Analysis and Computational Tooling.mp4

MP4

94.3 MB

14. Lab 11 Implementing Global and Local Alignment Algorithms.html

HTML

17.9 KB

15. Lab 12 Parsing GenBank and UniProt Data Formats Programmatically.html

HTML

18.2 KB

16. Lab 13 Building Motif Search Engines for Regulatory Regions.html

HTML

18.3 KB

17. Lab 14 Calculating Molecular Weights and Melting Temperatures.html

HTML

18 KB

18. Lab 15 Translating Nucleotide Sequences to Amino Acid Chains.html

HTML

17 KB

19. Lab 16 Constructing Codon Optimization Scripts for Expression.html

HTML

16.9 KB

20. Lab 17 Automating Restriction Enzyme Digestion Mapping.html

HTML

17.1 KB

21. Lab 18 Visualizing Sequence Features with Matplotlib.html

HTML

17.4 KB

22. Lab 19 Creating Reusable Command Line Interface Wrappers.html

HTML

17 KB

23. Lab 20 Validating Input Data Schemas with Pydantic.html

HTML

18.1 KB

4 - Module 3 Genetic Circuit Design and Simulation

24. Genetic Circuit Design and Simulation.mp4

MP4

93.1 MB

25. Lab 21 Modeling Transcriptional Regulation with Boolean Logic.html

HTML

16.8 KB

26. Lab 22 Simulating Gene Expression Kinetics with Ordinary Differential Equations.html

HTML

18.2 KB

27. Lab 23 Designing Synthetic Promoters and Ribosome Binding Sites.html

HTML

18 KB

28. Lab 24 Calculating Free Energy Profiles for RNA Secondary Structures.html

HTML

18.1 KB

29. Lab 25 Simulating Toggle Switch Dynamics in Python.html

HTML

17 KB

30. Lab 26 Constructing Oscillator Circuit Mathematical Models.html

HTML

17.8 KB

31. Lab 27 Evaluating Metabolic Load on Host Organisms.html

HTML

16.5 KB

32. Lab 28 Optimizing Plasmid Map Designs via Scripting.html

HTML

18 KB

33. Lab 29 Integrating SBOL Standards for Circuit Interchange.html

HTML

16.5 KB

34. Lab 30 Validating Circuit Stability Under Stochastic Noise.html

HTML

19 KB

5 - Module 4 Bioinformatics Pipeline Orchestration

35. Bioinformatics Pipeline Orchestration.mp4

MP4

80.6 MB

36. Lab 31 Introduction to Containerized Workflow Engines.html

HTML

18.8 KB

37. Lab 32 Writing Your First Nextflow Pipeline Script.html

HTML

17.1 KB

38. Lab 33 Managing Pipeline Dependencies with Conda Environments.html

HTML

18.2 KB

39. Lab 34 Executing Workflows Across Local Multi-Core CPUs.html

HTML

18.5 KB

40. Lab 35 Implementing Process Channel Operators in Nextflow.html

HTML

18.8 KB

41. Lab 36 Handling Workflow Error Strategies and Retries.html

HTML

18.2 KB

42. Lab 37 Publishing Structured Output Artifacts to Local Storage.html

HTML

18.5 KB

43. Lab 38 Monitoring Pipeline Execution Metrics and Logs.html

HTML

19.1 KB

44. Lab 39 Scaling Workflows Using Docker Container Backends.html

HTML

18.4 KB

45. Lab 40 Creating Modular Pipeline Sub-Workflows for Reuse.html

HTML

17.9 KB

6 - Module 5 Laboratory Information Systems and Automation

46. Laboratory Information Systems and Automation.mp4

MP4

97.7 MB

47. Lab 41 Interfacing with Laboratory Information Management Systems.html

HTML

19.6 KB

48. Lab 42 Designing Relational Schemas for Sample Tracking.html

HTML

18.2 KB

49. Lab 43 Generating Barcode Labels for Plate Management.html

HTML

18.6 KB

50. Lab 44 Parsing Liquid Handler CSV Output Files Programmatically.html

HTML

19.1 KB

51. Lab 45 Automating Well-Plate Data Normalization Scripts.html

HTML

19.6 KB

52. Lab 46 Integrating REST APIs for Instrument Data Retrieval.html

HTML

18.4 KB

53. Lab 47 Implementing Secure Authentication for LIMS Access.html

HTML

20.1 KB

54. Lab 48 Validating Instrument Calibration Logs Automatically.html

HTML

19.8 KB

55. Lab 49 Tracking Reagent Inventory and Expiry Workflows.html

HTML

19.1 KB

56. Lab 50 Building Audit Trail Loggers for Experimental Runs.html

HTML

19.7 KB

7 - Module 6 Metabolic Engineering and Flux Balance Analysis

57. Metabolic Engineering and Flux Balance Analysis.mp4

MP4

105.1 MB

58. Lab 51 Constructing Stoichiometric Matrix Models for Metabolism.html

HTML

18.5 KB

59. Lab 52 Setting Up Constraint-Based Reconstruction and Analysis.html

HTML

18.8 KB

60. Lab 53 Implementing Linear Programming Solvers for Flux Analysis.html

HTML

17.9 KB

61. Lab 54 Calculating Theoretical Maximum Yields for Target Molecules.html

HTML

17.9 KB

62. Lab 55 Simulating Gene Knockout Effects on Growth Rate.html

HTML

17.9 KB

63. Lab 56 Analyzing Carbon Flux Distribution Across Pathways.html

HTML

17.8 KB

64. Lab 57 Integrating Transcriptomic Data into Metabolic Models.html

HTML

18.4 KB

65. Lab 58 Optimizing Heterologous Pathway Insertion Points.html

HTML

17.5 KB

66. Lab 59 Evaluating Energy Balance Constraints in Cellular Systems.html

HTML

17.7 KB

67. Lab 60 Visualizing Metabolic Networks with Interactive Graphs.html

HTML

19.7 KB

8 - Module 7 Machine Learning for Protein and Sequence Engineering

68. Machine Learning for Protein and Sequence Engineering.mp4

MP4

113.5 MB

69. Lab 61 Preparing Datasets for Machine Learning in Biology.html

HTML

17.7 KB

70. Lab 62 Extracting One-Hot Encoding Features from Sequences.html

HTML

17.3 KB

71. Lab 63 Building Scikit-Learn Models for Property Prediction.html

HTML

18.6 KB

72. Lab 64 Training Convolutional Neural Networks on Motifs.html

HTML

18.5 KB

73. Lab 65 Evaluating Model Generalization via Cross-Validation.html

HTML

17.8 KB

74. Lab 66 Implementing Hyperparameter Tuning for Bio-Models.html

HTML

19.3 KB

75. Lab 67 Interfacing with Open-Source Protein Structure APIs.html

HTML

18 KB

76. Lab 68 Parsing AlphaFold Output Coordinate Files Programmatically.html

HTML

17.9 KB

77. Lab 69 Calculating Root Mean Square Deviation for Structures.html

HTML

17.4 KB

78. Lab 70 Packaging Machine Learning Models into Inference Containers.html

HTML

18.4 KB

9 - Module 8 Biosecurity, Compliance, and Governance

79. Biosecurity, Compliance, and Governance.mp4	MP4	98 MB
80. Lab 71 Implementing Sequence Screening against Watchlists.html	HTML	19.5 KB
81. Lab 72 Configuring Automated Compliance Checkpoints in Pipelines.html	HTML	18.9 KB
82. Lab 73 Enforcing GDPR and Data Anonymization Standards.html	HTML	19.4 KB
83. Lab 74 Adhering to EU AI Act Requirements for Bio-Models.html	HTML	19.7 KB
84. Lab 75 Setting Up Role-Based Access Control for Sensitive Data.html	HTML	20.2 KB
85. Lab 76 Encrypting Genomic Data at Rest and in Transit.html	HTML	20.4 KB
86. Lab 77 Generating Audit-Ready Compliance Reports Automatically.html	HTML	18.6 KB
87. Lab 78 Managing Supply Chain Provenance for Biological Materials.html	HTML	19.4 KB
88. Lab 79 Establishing Secure Incident Response Playbooks.html	HTML	19.2 KB
89. Lab 80 Conducting Automated Vulnerability Scans on Tooling.html	HTML	18.5 KB

3. Lab 1 Installing Core Bio Python Packages and CLI Tools.html

HTML

19.4 KB

4. Lab 2 Configuring Version Control for Biological Sequences.html

HTML

17.3 KB

5. Lab 3 Writing Your First FASTA and FASTQ Parsers.html

HTML

18.1 KB

6. Lab 4 Setting Up Local Sequence Alignment Workflows.html

HTML

17.5 KB

7. Lab 5 Validating File Integrity with Checksums and Hashes.html

HTML

16.9 KB

8. Lab 6 Building Local SQLite Databases for Gene Catalogs.html

HTML

18.3 KB

9. Lab 7 Containerizing Basic Python Scripts with Docker.html

HTML

17.3 KB

90. Cloud Scaling and Production Infrastructure.mp4

MP4

96.4 MB

91. Lab 81 Provisioning Cloud Infrastructure with Terraform.html

HTML

19.7 KB

92. Lab 82 Configuring Kubernetes Clusters for Bio-Workloads.html

HTML

20.1 KB

93. Lab 83 Deploying Nextflow Workflows via Kubernetes Batch.html

HTML

18.2 KB

94. Lab 84 Managing Persistent Storage Volumes for Large Datasets.html

HTML

18.4 KB

95. Lab 85 Implementing Auto-Scaling Policies for Compute Nodes.html

HTML

19.1 KB

96. Lab 86 Configuring Centralized Logging with Open-Source Stacks.html

HTML

19.1 KB

97. Lab 87 Setting Up Prometheus Metrics for Pipeline Monitoring.html

HTML

20.2 KB

98. Lab 88 Securing Cluster Communications with Mutual TLS.html

HTML

18.4 KB

99. Lab 89 Optimizing Cloud Compute Costs for Large Analyses.html

HTML

19.7 KB

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Udemy - Synthetic Biology Mastery - 100 Labs with Nextflow

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